Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs56051572 chr18:71819328 C/T 4.02E-5 256 31.57 32.13 6.43 KM Plot
SARC rs561482 chr1:182452362 G/A 1.54E-7 258 31.1 34.88 6.72 KM Plot
SARC rs56183473 chr20:34172245 C/T 0 250 31.97 31.08 1.07 KM Plot
SARC rs56184684 chr11:55473427 G/T 1.29E-6 250 35.52 25.77 13.4 KM Plot
SARC rs56201818 chr4:87952633 T/C 1.54E-5 256 30.75 36.4 19.8 KM Plot
SARC rs56395939 chr4:87963633 T/G 1.18E-5 255 30.75 36.6 19.8 KM Plot
SARC rs56406125 chr4:87940205 G/T 7.59E-5 257 31.37 36.4 19.88 KM Plot
SARC rs56780891 chr17:45490611 AT/A 8.85E-5 258 19.97 34 32.35 KM Plot
SARC rs57427906 chr17:45494014 G/A 8.85E-5 258 19.97 34 32.35 KM Plot
SARC rs57485242 chr20:34185296 C/G 0 251 31.97 32.3 1.07 KM Plot
SARC rs5749001 chr22:17746528 C/T 7.1E-5 258 10.07 37.82 31.1 KM Plot
SARC rs5750609 chr22:38884775 A/G 7.48E-5 258 18.33 27.1 32.88 KM Plot
SARC rs5757184 chr22:39019853 A/G 1.17E-5 258 19.02 25.57 33.17 KM Plot
SARC rs5757234 chr22:39072686 C/T 6.77E-5 254 31.97 35.72 18.33 KM Plot
SARC rs5757238 chr22:39073896 A/G 6.77E-5 254 31.97 35.72 18.33 KM Plot